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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29269010_29269770_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29269010 - 29269770
Intron Length:
761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGAAAT
U12 Branch Point Sequence:
GGTTGTTGAAAT
Flanking Amino Acid:
LMRQNFEIGNNFARVKMQVT
Intron Amino Acid Position:
1549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
83.4
28
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
81.9
0.72
0.8
76.8
31.9
Minor 5ss
37.3
-1.4
2.9
50.4
39.3
Minor BPS
48.3
-0
2
67.86
42.5

Associated Gene:

Gene:
DOCK7
Ensembl Gene ID:
ENSAPLG00000015722
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037443
29259034 - 29349991
90958
ENSAPLT00000021155
29259034 - 29349991
90958
ENSAPLT00000016478
29264228 - 29349991
85764