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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29270797_29271290_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29270797 - 29271290
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TTTTGCTCATAT
Flanking Amino Acid:
ILDTLEIVVQTVSVTESKES
Intron Amino Acid Position:
1453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
85.9
0.81
0.8
80.7
31.4
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
48.7
-0
2.3
77.64
44.4

Associated Gene:

Gene:
DOCK7
Ensembl Gene ID:
ENSAPLG00000015722
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037443
29259034 - 29349991
90958
ENSAPLT00000021155
29259034 - 29349991
90958
ENSAPLT00000016478
29264228 - 29349991
85764