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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29276894_29277700_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29276894 - 29277700
Intron Length:
807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTAC
5'SS Class:
major
3'SS Sequence:
TGTTTCTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAGAAT
U12 Branch Point Sequence:
TGGGGATTAACT
Flanking Amino Acid:
ETVPQLYDFTESHNQRGRPS
Intron Amino Acid Position:
1230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
73
32.2
Major BPS
62.9
0.32
1.5
72.3
40.4
Major PPT
79.8
0.67
1
77.1
37.1
Minor 5ss
46.6
-0.3
2.5
61.2
43.7
Minor BPS
49
0
2.1
69.68
46.8

Associated Gene:

Gene:
DOCK7
Ensembl Gene ID:
ENSAPLG00000015722
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037443
29259034 - 29349991
90958
ENSAPLT00000021155
29259034 - 29349991
90958
ENSAPLT00000016478
29264228 - 29349991
85764