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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29281498_29282545_R

Intron Information:

Intron Rank:
27
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
29281498 - 29282545
Intron Length:
1048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCTTG
5'SS Class:
weak_major
3'SS Sequence:
ATTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ACTTCTGAAACT
Flanking Amino Acid:
SPSVSSATSQSSGFSTNVQD
Intron Amino Acid Position:
1127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.3
60.8
46.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
92.1
0.95
0.7
85.1
34.9
Minor 5ss
56.8
0.23
2.7
73.3
43.6
Minor BPS
49.5
0.04
2.3
73.4
44.1

Associated Gene:

Gene:
DOCK7
Ensembl Gene ID:
ENSAPLG00000015722
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037443
29259034 - 29349991
90958
ENSAPLT00000021155
29259034 - 29349991
90958
ENSAPLT00000016478
29264228 - 29349991
85764