About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29283333_29283504_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29283333 - 29283504
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGCG
5'SS Class:
major
3'SS Sequence:
TCCTTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TCTTTCCTATTT
Flanking Amino Acid:
AGDIVSRFQKDTEMVERLNT
Intron Amino Acid Position:
1032

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
63.3
41.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
83.1
0.75
0.7
76.9
31.9
Minor 5ss
29.6
-2.3
3.4
39
46.3
Minor BPS
53.9
0.2
1.9
75.75
41.6

Associated Gene:

Gene:
DOCK7
Ensembl Gene ID:
ENSAPLG00000015722
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037443
29259034 - 29349991
90958
ENSAPLT00000021155
29259034 - 29349991
90958
ENSAPLT00000016478
29264228 - 29349991
85764