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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29283646_29283769_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29283646 - 29283769
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCAAA
5'SS Class:
major
3'SS Sequence:
TATATTCCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TCCACTGTAATT
Flanking Amino Acid:
QQAWFFFELMVKSMVHHLYF
Intron Amino Acid Position:
985

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
72
34.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
76.2
0.59
0.8
70.2
36
Minor 5ss
33.4
-1.9
2.8
36.4
42
Minor BPS
49.5
0.05
2
67.54
44.3

Associated Gene:

Gene:
DOCK7
Ensembl Gene ID:
ENSAPLG00000015722
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037443
29259034 - 29349991
90958
ENSAPLT00000021155
29259034 - 29349991
90958
ENSAPLT00000016478
29264228 - 29349991
85764