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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29283866_29290020_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29283866 - 29290020
Intron Length:
6155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAATG
5'SS Class:
strong_major
3'SS Sequence:
TGCATCTGTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TAACTCTGGATT
Flanking Amino Acid:
DEVRSIIGSKLFHEELALQW
Intron Amino Acid Position:
923

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
77.2
37.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
66.8
0.38
1
61.7
39.8
Minor 5ss
43.2
-0.7
2.9
57.1
47.2
Minor BPS
51.1
0.11
1.4
66.54
37.8

Associated Gene:

Gene:
DOCK7
Ensembl Gene ID:
ENSAPLG00000015722
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021155
29259034 - 29349991
90958