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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29291728_29293024_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29291728 - 29293024
Intron Length:
1297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTTTAT
5'SS Class:
major
3'SS Sequence:
TTACTACTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TCTTTCTTACTA
Flanking Amino Acid:
VRPPVIAGQIVNLGQASFEA
Intron Amino Acid Position:
811

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.6
31.1
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
81.3
0.7
0.8
78.2
35
Minor 5ss
48
-0.2
2.5
66.9
44.3
Minor BPS
66.5
0.51
1.6
74.1
38.6

Associated Gene:

Gene:
DOCK7
Ensembl Gene ID:
ENSAPLG00000015722
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037443
29259034 - 29349991
90958
ENSAPLT00000021155
29259034 - 29349991
90958
ENSAPLT00000016478
29264228 - 29349991
85764