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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29294813_29295643_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29294813 - 29295643
Intron Length:
831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAT
5'SS Class:
strong_major
3'SS Sequence:
GGTCTCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
GGTCTCTTCACA
Flanking Amino Acid:
EAYTAVVYHNRSPDFHEEIK
Intron Amino Acid Position:
624

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
74
36.4
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
75
0.56
0.9
68.2
37.5
Minor 5ss
33
-1.9
3.3
47.4
48
Minor BPS
55.9
0.18
1.8
66.16
39.9

Associated Gene:

Gene:
DOCK7
Ensembl Gene ID:
ENSAPLG00000015722
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016478
29264228 - 29349991
85764
ENSAPLT00000037443
29259034 - 29349991
90958
ENSAPLT00000021155
29259034 - 29349991
90958