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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29295715_29296581_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29295715 - 29296581
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGGGA
5'SS Class:
major
3'SS Sequence:
TTCTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTCTTTTTTACA
Flanking Amino Acid:
YGEDPSNAMPVIFGKSSCPE
Intron Amino Acid Position:
601

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
60.5
40.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
94.8
1.01
0.6
90.9
21.3
Minor 5ss
23.6
-3
3.3
29
43.5
Minor BPS
64.3
0.44
1.6
74.15
37.7

Associated Gene:

Gene:
DOCK7
Ensembl Gene ID:
ENSAPLG00000015722
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021155
29259034 - 29349991
90958
ENSAPLT00000016478
29264228 - 29349991
85764
ENSAPLT00000037443
29259034 - 29349991
90958