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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29296700_29311853_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29296700 - 29311853
Intron Length:
15154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCATTCTCACAG
Flanking Amino Acid:
RDVYVPNTTYRNLLYVYPQS
Intron Amino Acid Position:
561

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
89
25.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
86.1
0.81
0.8
81.1
30.9
Minor 5ss
42.5
-0.8
2.8
59
45.4
Minor BPS
44.9
-0.5
1.9
49.14
44.4

Associated Gene:

Gene:
DOCK7
Ensembl Gene ID:
ENSAPLG00000015722
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037443
29259034 - 29349991
90958
ENSAPLT00000021155
29259034 - 29349991
90958
ENSAPLT00000016478
29264228 - 29349991
85764