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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29302110_29303099_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29302110 - 29303099
Intron Length:
990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAC
U12 Branch Point Sequence:
CTAACCACAAAC
Flanking Amino Acid:
QETNEISSLKAFVERQDNHI
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
59.7
0.24
1.1
61.2
32.6
Major PPT
78.5
0.64
0.8
76.4
32.2
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
44.9
-0.4
1.9
55.17
42

Associated Gene:

Gene:
ANGPTL3
Ensembl Gene ID:
ENSAPLG00000001634
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001828
29301498 - 29311091
9594