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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29303211_29304073_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29303211 - 29304073
Intron Length:
863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTGA
5'SS Class:
major
3'SS Sequence:
TGCTTCTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
CAGTCTGTAATT
Flanking Amino Acid:
HNQIMELEDKLNHIELQELA
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
60.1
41.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
80.3
0.68
0.8
72.6
37.6
Minor 5ss
34.4
-1.8
3.5
47.2
48.2
Minor BPS
52
0.14
2
68.12
43.7

Associated Gene:

Gene:
ANGPTL3
Ensembl Gene ID:
ENSAPLG00000001634
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001828
29301498 - 29311091
9594