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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29306136_29307902_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29306136 - 29307902
Intron Length:
1767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAAAATG
5'SS Class:
major
3'SS Sequence:
TATCACTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTTGCTATCACT
Flanking Amino Acid:
AYVKGFGDLNEEFWLGLNKT
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
69.2
41.5
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
80.2
0.68
0.9
73.5
36.3
Minor 5ss
36.9
-1.5
3.2
49.9
46.2
Minor BPS
52.7
0.17
2.1
80.33
41.9

Associated Gene:

Gene:
ANGPTL3
Ensembl Gene ID:
ENSAPLG00000001634
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001828
29301498 - 29311091
9594