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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29308176_29309510_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29308176 - 29309510
Intron Length:
1335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATCAGTA
5'SS Class:
major
3'SS Sequence:
TCTTTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
CTGACATTACAA
Flanking Amino Acid:
NNFNCPENYLGGWWHSECEE
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.2
67.8
37.5
Major BPS
64.7
0.37
1
73
31.5
Major PPT
87.5
0.84
0.6
88.2
21.6
Minor 5ss
45.6
-0.5
3.2
64.6
46.8
Minor BPS
44.8
-0.4
2
54.43
43.8

Associated Gene:

Gene:
ANGPTL3
Ensembl Gene ID:
ENSAPLG00000001634
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001828
29301498 - 29311091
9594