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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29321963_29324256_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29321963 - 29324256
Intron Length:
2294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTATCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATCTATTT
Flanking Amino Acid:
QRLLVKCLSLKFEIEIEPIF
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
88.1
25.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.9
0.51
1.1
72.2
37.3
Minor 5ss
42
-0.9
2.8
55.1
35.9
Minor BPS
49.4
0.04
2
77.42
39.4

Associated Gene:

Gene:
DOCK7
Ensembl Gene ID:
ENSAPLG00000015722
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037443
29259034 - 29349991
90958
ENSAPLT00000021155
29259034 - 29349991
90958
ENSAPLT00000016478
29264228 - 29349991
85764