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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29358014_29359902_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
29358014 - 29359902
Intron Length:
1889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGGTTG
5'SS Class:
major
3'SS Sequence:
TTCTGTAATACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
ATTTCTGTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.2
71.6
40.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
75.5
0.57
1
69.7
39.5
Minor 5ss
36.7
-1.5
3.2
47.2
48.3
Minor BPS
63.7
0.43
2
77.18
34.1

Associated Gene:

Gene:
ATG4C
Ensembl Gene ID:
ENSAPLG00000015314
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035392
29357935 - 29384871
26937