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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29361676_29361797_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29361676 - 29361797
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGACCC
5'SS Class:
major
3'SS Sequence:
GCATTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTTGCATTTATT
Flanking Amino Acid:
FCNNLFVIYESWVLKTKTYF
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
66.2
38
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
73
0.52
0.9
70.5
39.7
Minor 5ss
34.9
-1.7
3.1
44.6
36.5
Minor BPS
56.7
0.29
2
81.12
40.6

Associated Gene:

Gene:
ATG4C
Ensembl Gene ID:
ENSAPLG00000015314
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032715
29361315 - 29384871
23557