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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29361882_29362542_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29361882 - 29362542
Intron Length:
661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTACG
5'SS Class:
major
3'SS Sequence:
CTTTGCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
ATAACTTGAATT
Flanking Amino Acid:
LGKCYHFKSDESGELSTDGS
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.8
40.4
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
83.3
0.75
0.8
76.4
32.3
Minor 5ss
42.3
-0.9
2.4
48.9
41.3
Minor BPS
59.8
0.39
1.4
73.14
37.5

Associated Gene:

Gene:
ATG4C
Ensembl Gene ID:
ENSAPLG00000015314
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035392
29357935 - 29384871
26937
ENSAPLT00000032715
29361315 - 29384871
23557
ENSAPLT00000015973
29357935 - 29383771
25837