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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29367895_29369385_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29367895 - 29369385
Intron Length:
1491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTGTCTTTAAAT
Flanking Amino Acid:
VTVYVAQDCTVYSSDVIDRQ
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
85.2
0.79
0.8
77
37.2
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
72.6
0.79
1.4
81.98
39.3

Associated Gene:

Gene:
ATG4C
Ensembl Gene ID:
ENSAPLG00000015314
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035392
29357935 - 29384871
26937
ENSAPLT00000032715
29361315 - 29384871
23557
ENSAPLT00000015973
29357935 - 29383771
25837