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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29374415_29375075_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29374415 - 29375075
Intron Length:
661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GTTTTTTGAATT
Flanking Amino Acid:
KQSYYFAGFQDDSLIYMDPH
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
1
86.4
29.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
82.9
0.74
0.8
78
30.8
Minor 5ss
35
-1.7
3.3
50
46.3
Minor BPS
67.2
0.62
1.3
80.96
34.8

Associated Gene:

Gene:
ATG4C
Ensembl Gene ID:
ENSAPLG00000015314
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035392
29357935 - 29384871
26937
ENSAPLT00000032715
29361315 - 29384871
23557
ENSAPLT00000015973
29357935 - 29383771
25837