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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29379529_29383600_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29379529 - 29383600
Intron Length:
4072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTACGTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AACATTTTATCT
Flanking Amino Acid:
FEKASEEITKMLKSSSKEKY
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
32.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75
0.56
0.9
69.6
36.4
Minor 5ss
35.9
-1.6
3.5
51.5
45.7
Minor BPS
49.7
0.06
1.6
63.47
41

Associated Gene:

Gene:
ATG4C
Ensembl Gene ID:
ENSAPLG00000015314
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035392
29357935 - 29384871
26937
ENSAPLT00000032715
29361315 - 29384871
23557
ENSAPLT00000015973
29357935 - 29383771
25837