Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29438241_29439416_R

Intron Information:

Intron Rank:

130607

Intron Class:

major

Intron Phase:

Intron Coordinates:

29438241 - 29439416

Intron Length:

1176

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTT|GTAAGTAGA

5'SS Class:

major

3'SS Sequence:

GTTGTAATTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

AATGTTGTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.5

0.62

1.1

72.7

38.1

Major BPS

84.4

0.85

1.1

34.5

Major PPT

73.9

0.54

63.5

46.2

Minor 5ss

37.7

-1.4

2.8

48.3

41.7

Minor BPS

47.9

-0

66.17

39.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017506

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032231

29433564 - 29439474

5911