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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29464265_29477048_R

Intron Information:

Intron Rank:
151854
Intron Class:
major
Intron Phase:
Intron Coordinates:
29464265 - 29477048
Intron Length:
12784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTGTTTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
83.9
0.76
0.7
80.1
32
Minor 5ss
38.8
-1.3
3
52.9
44.3
Minor BPS
54.6
0.14
2.1
74.34
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029247
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034721
29463381 - 29477291
13911