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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29529590_29530360_F

Intron Information:

Intron Rank:
145790
Intron Class:
major
Intron Phase:
Intron Coordinates:
29529590 - 29530360
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAACTTTC
5'SS Class:
major
3'SS Sequence:
TTTTCTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTCCACTGAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.2
73.2
39.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
90.1
0.9
0.7
85.6
27.2
Minor 5ss
49.9
-0
2.5
61.8
43
Minor BPS
49.4
0.03
2
71.51
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028556
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017703
29527451 - 29535019
7569