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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29558106_29561928_R

Intron Information:

Intron Rank:
146108
Intron Class:
major
Intron Phase:
Intron Coordinates:
29558106 - 29561928
Intron Length:
3823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGTGGG
5'SS Class:
major
3'SS Sequence:
ATTTTTCACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTATTTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
63.3
43.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.6
0.67
0.9
78.5
34.4
Minor 5ss
25.6
-2.8
3.1
31.6
42.7
Minor BPS
60.3
0.4
1.7
76.8
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026013
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018318
29557854 - 29562195
4342