About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29558637_29558959_R

Intron Information:

Intron Rank:
146112
Intron Class:
major
Intron Phase:
Intron Coordinates:
29558637 - 29558959
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCCATTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTATTTCCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75
33.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79.9
0.67
0.8
72.3
37.4
Minor 5ss
40
-1.1
3
53.2
44.1
Minor BPS
47.7
-0.1
1.9
71.94
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026013
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044286
29558555 - 29562195
3641