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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29574315_29577931_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29574315 - 29577931
Intron Length:
3617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACTT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
AATACATTAATG
Flanking Amino Acid:
RWTVSLSSYSGAGKPPMYGD
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
37.4
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
84.7
0.78
0.6
83.9
24.2
Minor 5ss
38
-1.4
3.3
57.1
47
Minor BPS
57.5
0.1
1.7
61.5
40

Associated Gene:

Gene:
ALG6
Ensembl Gene ID:
ENSAPLG00000014868
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015538
29574233 - 29595218
20986