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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29578017_29581407_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29578017 - 29581407
Intron Length:
3391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTCAATATAT
Flanking Amino Acid:
EVTYNLPIRQWYFNTSDNNL
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.1
0.88
0.7
88.5
28.2
Minor 5ss
37.6
-1.4
2.8
48.3
42.5
Minor BPS
46.6
-0.1
2.2
71.65
44.5

Associated Gene:

Gene:
ALG6
Ensembl Gene ID:
ENSAPLG00000014868
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015538
29574233 - 29595218
20986