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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29581498_29582381_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29581498 - 29582381
Intron Length:
884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TGTGCCTGTACT
Flanking Amino Acid:
TAYHSFLCAYIAKLINPDWI
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
79.7
29
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
88.8
0.87
0.7
83.2
31.9
Minor 5ss
42.9
-0.8
2.7
55.2
42.1
Minor BPS
56.6
0.29
2
77.97
43.8

Associated Gene:

Gene:
ALG6
Ensembl Gene ID:
ENSAPLG00000014868
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015538
29574233 - 29595218
20986