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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29589137_29589178_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
29589137 - 29589178
Intron Length:
42

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGTCTCTT
5'SS Class:
weak_major
3'SS Sequence:
ATATACAACTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTGTCCTTAACA
Flanking Amino Acid:
GHLLLIPVLSLSLGFALWGV
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50
0
1.2
54.7
43.8
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
60.8
0.24
1
56.8
42.5
Minor 5ss
49.3
-0
2.8
76.7
38.6
Minor BPS
90.6
1.27
0.9
91.48
29.8

Associated Gene:

Gene:
ALG6
Ensembl Gene ID:
ENSAPLG00000014868
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015538
29574233 - 29595218
20986