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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29589354_29589834_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29589354 - 29589834
Intron Length:
481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTCTCTTTATT
Flanking Amino Acid:
KCFKKGLKGKGLVLLTKIAG
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
71.1
40.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
85.5
0.8
0.8
80.8
29.6
Minor 5ss
32.6
-2
3.1
35.3
41.4
Minor BPS
67.4
0.63
1.6
85.04
35.1

Associated Gene:

Gene:
ALG6
Ensembl Gene ID:
ENSAPLG00000014868
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015538
29574233 - 29595218
20986