About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29589971_29591871_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29589971 - 29591871
Intron Length:
1901

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCATGCACG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAATGACTAATT
Flanking Amino Acid:
LFPIDRGLFEDKVANIWCSL
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
1.1
68.7
43.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
87.5
0.84
0.7
81.1
30.9
Minor 5ss
35.5
-1.7
3.8
49
47
Minor BPS
46
-0.2
2.2
68.3
42.1

Associated Gene:

Gene:
ALG6
Ensembl Gene ID:
ENSAPLG00000014868
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015538
29574233 - 29595218
20986