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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29622664_29626262_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29622664 - 29626262
Intron Length:
3599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTAGGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTATCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTCCGTATTT
Flanking Amino Acid:
MSAKRSLQLDG
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.3
0.27
1.4
59.8
45.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.2
0.9
0.7
85.2
29.1
Minor 5ss
36.2
-1.6
3
45.4
37.2
Minor BPS
61.7
0.45
2.2
87.57
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014813
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015436
29601015 - 29626267
25253