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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29629058_29631641_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29629058 - 29631641
Intron Length:
2584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTGTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ATATGCTTAATA
Flanking Amino Acid:
NIKSKEQLRLVLQQAGRNPS
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
84.4
33
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
85.7
0.8
0.9
84.8
35.4
Minor 5ss
38.3
-1.3
3.4
57.5
46.8
Minor BPS
67.2
0.54
1.7
74.62
37

Associated Gene:

Gene:
EFCAB7
Ensembl Gene ID:
ENSAPLG00000014663
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015298
29628870 - 29648788
19919