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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29633463_29634021_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29633463 - 29634021
Intron Length:
559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTCCCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAC
U12 Branch Point Sequence:
TTTTGCTTACCA
Flanking Amino Acid:
NCSGKLDYKKFCDLYMATSE
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.5
39.2
Major BPS
66.4
0.41
1.1
57.4
41.4
Major PPT
69
0.43
1
67.5
38.2
Minor 5ss
36.2
-1.6
3.2
46.5
48.8
Minor BPS
66.8
0.52
2
83.03
38.2

Associated Gene:

Gene:
EFCAB7
Ensembl Gene ID:
ENSAPLG00000014663
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015298
29628870 - 29648788
19919