Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29634218_29634882_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29634218 - 29634882

Intron Length:

665

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTTATT

5'SS Class:

strong_major

3'SS Sequence:

TATCTGTTTATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATAAC

U12 Branch Point Sequence:

AATAACTAAATA

Flanking Amino Acid:

KTDHKLAPTKGDSRTPSRPL

Intron Amino Acid Position:

228

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.74

85.4

30.8

Major BPS

70.1

0.5

70.3

31.9

Major PPT

78.4

0.64

0.9

72.7

37.3

Minor 5ss

47.8

-0.2

2.5

68.9

41.7

Minor BPS

49.1

-0

1.8

60.97

38.8

Associated Gene:

Gene:

EFCAB7

Ensembl Gene ID:

ENSAPLG00000014663

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015298

29628870 - 29648788

19919