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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29640268_29640452_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29640268 - 29640452
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CCTTTTTCATCT
Flanking Amino Acid:
DSELALTKECRAALLDIFET
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
74.4
37.7
Major BPS
100
1.24
0.5
100
0
Major PPT
87.6
0.85
0.7
85.1
29.2
Minor 5ss
30.9
-2.2
3
42
44.5
Minor BPS
49.1
0.01
1.8
66.8
44.7

Associated Gene:

Gene:
EFCAB7
Ensembl Gene ID:
ENSAPLG00000014663
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015298
29628870 - 29648788
19919