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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29640587_29642794_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29640587 - 29642794
Intron Length:
2208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAA
U12 Branch Point Sequence:
TCTTTTTGAACA
Flanking Amino Acid:
CDEEAWAVCKENFDMKKNEL
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
67.1
0.42
1
59
37.9
Major PPT
78.8
0.65
1
76.7
36.2
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
68.2
0.57
1.4
75.34
36.3

Associated Gene:

Gene:
EFCAB7
Ensembl Gene ID:
ENSAPLG00000014663
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015298
29628870 - 29648788
19919