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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29645125_29647414_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29645125 - 29647414
Intron Length:
2290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
TRITSVIENKSENKVIIHVN
Intron Amino Acid Position:
571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.3
40.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.5
0.84
0.7
82
28.7
Minor 5ss
38.5
-1.3
3.4
55.3
48.9
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
EFCAB7
Ensembl Gene ID:
ENSAPLG00000014663
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015298
29628870 - 29648788
19919