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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29662150_29663226_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29662150 - 29663226
Intron Length:
1077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
TCACAGTTAGTT
Flanking Amino Acid:
DLENKFKPFTVEIVDSVEAY
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.2
29.5
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
90.9
0.92
0.6
83.9
31.1
Minor 5ss
32.3
-2
3.3
42.9
44.7
Minor BPS
42.2
-0.5
2.3
59.18
44.1

Associated Gene:

Gene:
PGM1
Ensembl Gene ID:
ENSAPLG00000014087
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014728
29650569 - 29670242
19674