About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29664337_29664890_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29664337 - 29664890
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGCACCT
5'SS Class:
major
3'SS Sequence:
CTTGCCTTCGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
TTGCCTTCGAAG
Flanking Amino Acid:
RSMPTSGALDRVAHATKIAL
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
60
44.9
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
66.8
0.38
1
67.2
32.9
Minor 5ss
38.8
-1.3
3.4
57.7
46.5
Minor BPS
46.7
-0.4
1.7
53.27
41.7

Associated Gene:

Gene:
PGM1
Ensembl Gene ID:
ENSAPLG00000014087
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014728
29650569 - 29670242
19674