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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29667512_29668783_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29667512 - 29668783
Intron Length:
1272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGAA
5'SS Class:
major
3'SS Sequence:
TGACTGGTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
CCTTCCTAATCA
Flanking Amino Acid:
WQKYGRNFFTRYDYEEVDAD
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.3
36.2
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
64.6
0.33
1
57.9
42.9
Minor 5ss
21.7
-3.3
3.4
27.5
44.3
Minor BPS
54.4
0.14
2
66.52
46.2

Associated Gene:

Gene:
PGM1
Ensembl Gene ID:
ENSAPLG00000014087
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014728
29650569 - 29670242
19674