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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29746682_29786161_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29746682 - 29786161
Intron Length:
39480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAAAT
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCAATAT
U12 Branch Point Sequence:
AATATACCAACA
Flanking Amino Acid:
KASSNPRSASGANSSVVADF
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
0.9
76.8
33.7
Major BPS
54.9
0.12
1.2
51.6
42.3
Major PPT
92.3
0.95
0.6
85.1
29.7
Minor 5ss
28.3
-2.5
3.2
39
46.4
Minor BPS
42.1
-0.6
2
54.37
37

Associated Gene:

Gene:
ROR1
Ensembl Gene ID:
ENSAPLG00000013960
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014563
29746621 - 29835599
88979