Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29786234_29798243_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29786234 - 29798243

Intron Length:

12010

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTGGA

5'SS Class:

strong_major

3'SS Sequence:

TTTCCCAAAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAC

U12 Branch Point Sequence:

TTTCCCAAAACA

Flanking Amino Acid:

SWNISSELDKDYFLTLDEPM

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.8

1.06

0.7

81.5

32.7

Major BPS

82.3

0.8

83.6

25.8

Major PPT

68.3

0.41

63.8

35.8

Minor 5ss

32.1

-2

3.1

40.8

45.4

Minor BPS

59.7

0.3

78.13

38.1

Associated Gene:

Gene:

ROR1

Ensembl Gene ID:

ENSAPLG00000013960

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040384

29686949 - 29835599

148651

ENSAPLT00000014563

29746621 - 29835599

88979