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Intron Name: Anas_platyrhynchos_platyrhynchos_8_29898026_29930034_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29898026 - 29930034

Intron Length:

32009

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGGACC

5'SS Class:

strong_major

3'SS Sequence:

ATTTTTTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

CCTTTCTGATTT

Flanking Amino Acid:

AEELGVVTMQRIFNSFVYTE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

71.2

37.3

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

0.97

0.7

88.8

27.4

Minor 5ss

32.5

-2

3.3

43.8

43.7

Minor BPS

50.8

0.1

1.7

67.65

Associated Gene:

Gene:

CACHD1

Ensembl Gene ID:

ENSAPLG00000013355

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027609

29897777 - 29991394

93618

ENSAPLT00000013932

29897777 - 29991394

93618