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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29901189_29930034_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29901189 - 29930034
Intron Length:
28846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGTAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CCTTTCTGATTT
Flanking Amino Acid:
MQRIFNSFVYTE
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
70.2
36.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
93
0.97
0.7
88.8
27.4
Minor 5ss
36
-1.6
3.5
49.3
47.2
Minor BPS
50.8
0.1
1.7
67.65
44

Associated Gene:

Gene:
CACHD1
Ensembl Gene ID:
ENSAPLG00000013355
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044903
29901183 - 29991171
89989