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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29939333_29949601_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29939333 - 29949601
Intron Length:
10269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
GTTGTCATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
GCTCTGCTAATC
Flanking Amino Acid:
DCCTIPPSMMEFDGNFNTNV
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
78.2
36.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
78.5
0.64
0.9
74.5
40
Minor 5ss
39.6
-1.2
2.8
49.5
40.3
Minor BPS
42.7
-0.5
2.2
52.52
39.1

Associated Gene:

Gene:
CACHD1
Ensembl Gene ID:
ENSAPLG00000013355
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044903
29901183 - 29991171
89989
ENSAPLT00000027609
29897777 - 29991394
93618
ENSAPLT00000013932
29897777 - 29991394
93618