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Intron Name: Anas_platyrhynchos_platyrhynchos_8_29957432_29959645_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29957432 - 29959645

Intron Length:

2214

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGACTC

5'SS Class:

strong_major

3'SS Sequence:

CGTTCTCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATGAT

U12 Branch Point Sequence:

GATGACTCACGG

Flanking Amino Acid:

RCKGSYEHRSRPVYVSTVRP

Intron Amino Acid Position:

232

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

70.1

40.8

Major BPS

0.45

57.8

Major PPT

79.9

0.67

0.8

73.5

31.5

Minor 5ss

35.5

-1.7

3.4

50.8

45.7

Minor BPS

36.8

-1.1

2.1

38.44

Associated Gene:

Gene:

CACHD1

Ensembl Gene ID:

ENSAPLG00000013355

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044903

29901183 - 29991171

89989

ENSAPLT00000027609

29897777 - 29991394

93618

ENSAPLT00000013932

29897777 - 29991394

93618