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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_29959791_29961395_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29959791 - 29961395
Intron Length:
1605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTCTCTTTTAAG
Flanking Amino Acid:
ILSSIDEHDKISVLTVADTV
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
83.9
30.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
78.4
0.64
1
82.7
26.3
Minor 5ss
44.3
-0.6
3.1
64.1
47.4
Minor BPS
55.8
0.04
1.9
64.24
43.6

Associated Gene:

Gene:
CACHD1
Ensembl Gene ID:
ENSAPLG00000013355
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044903
29901183 - 29991171
89989
ENSAPLT00000027609
29897777 - 29991394
93618
ENSAPLT00000013932
29897777 - 29991394
93618